☰ Navigation Tabs
SARS-CoV2 3C-Like protease complexed with Nemo peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Native protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 20% PEG3350, 0.1M Bis-Tris (pH 6.5)
Crystal Properties Matthews coefficient Solvent content 2.15 42.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.39 α = 102.51 b = 67.71 β = 89.91 c = 77.84 γ = 107.39
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Flat Si Rh coated Mirror 2021-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 38.12 96.4 0.097 0.115 0.995 8.86 3.529 67720 42.783
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 95.9 0.924 1.086 0.603 1.78 3.628
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Native protein 2.1 38.12 64333 3386 96.43 0.2479 0.2451 0.2493 0.2999 0.3002 RANDOM 37.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.51 -1.18 -0.27 0.13 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.127 r_dihedral_angle_3_deg 16.596 r_dihedral_angle_4_deg 16.004 r_dihedral_angle_1_deg 7.924 r_angle_refined_deg 1.413 r_angle_other_deg 1.195 r_chiral_restr 0.06 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.127 r_dihedral_angle_3_deg 16.596 r_dihedral_angle_4_deg 16.004 r_dihedral_angle_1_deg 7.924 r_angle_refined_deg 1.413 r_angle_other_deg 1.195 r_chiral_restr 0.06 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9530 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing