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Solution Structure of Sds3 Capped Tudor Domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 0.35 mM [U-100% 15N] Sds3 CTD 90% H2O/10% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 2 3D 1H-13C NOESY aliphatic 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 3 2D 1H-1H NOESY 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 4 3D CBCA(CO)NH 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 5 3D HNCACB 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 8 3D HCCH-COSY 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 7 3D HCCH-TOCSY 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600 6 3D C(CO)NH 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD 100% D2O 0.07 M 6.0 1 atm 298 Agilent Direct Drive 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent Direct Drive 600
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing Felix Accelrys Software Inc. 2 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment NMRFAM-SPARKY Lee W, Tonelli M, Markley JL. Bioinformatics. 2015 Apr 15; 31(8):1325-7. 4 peak picking NMRFAM-SPARKY Lee W, Tonelli M, Markley JL. Bioinformatics. 2015 Apr 15; 31(8):1325-7. 5 structure calculation CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read