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Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-30
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QXS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 298 20-25% PEG 3350, 200 mM MgCl2, 0.1 M Bis-Tris/Hepes/Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.15 42.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.665 α = 87.27 b = 58.621 β = 74.87 c = 93.932 γ = 62.91
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.0 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 90.37 86.7 0.987 4 7.3 89258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.639 0.475
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2QXS 1.58 90.37 89258 4633 70.12 0.2246 0.2232 0.2299 0.251 0.2569 RANDOM 27.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.09 -0.02 0.08 0.08 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.699 r_dihedral_angle_4_deg 20.083 r_dihedral_angle_3_deg 14.215 r_dihedral_angle_1_deg 5.576 r_angle_refined_deg 1.522 r_angle_other_deg 1.326 r_chiral_restr 0.144 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.699 r_dihedral_angle_4_deg 20.083 r_dihedral_angle_3_deg 14.215 r_dihedral_angle_1_deg 5.576 r_angle_refined_deg 1.522 r_angle_other_deg 1.326 r_chiral_restr 0.144 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7626 Nucleic Acid Atoms Solvent Atoms 347 Heterogen Atoms 182
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing