X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 MM TRIS PH 8.0, 20% (W/V) PEG6000, 0.2 M NACL
Crystal Properties
Matthews coefficientSolvent content
358.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.895α = 90
b = 95.125β = 90
c = 129.325γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-03-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.0000SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7676.6399.10.0560.0650.99917.284.22766867.491
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.763.0199.80.4340.4950.9983.34.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.7676.632694971999.110.21550.21430.2613RANDOM71.635
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.580.261.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.805
r_dihedral_angle_4_deg13.134
r_dihedral_angle_3_deg12.814
r_dihedral_angle_1_deg5.183
r_angle_refined_deg1.092
r_angle_other_deg0.898
r_nbd_refined0.172
r_nbtor_refined0.16
r_symmetry_vdw_refined0.141
r_nbd_other0.126
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.805
r_dihedral_angle_4_deg13.134
r_dihedral_angle_3_deg12.814
r_dihedral_angle_1_deg5.183
r_angle_refined_deg1.092
r_angle_other_deg0.898
r_nbd_refined0.172
r_nbtor_refined0.16
r_symmetry_vdw_refined0.141
r_nbd_other0.126
r_symmetry_vdw_other0.112
r_xyhbond_nbd_refined0.097
r_nbtor_other0.074
r_symmetry_hbond_refined0.073
r_chiral_restr0.06
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5942
Nucleic Acid Atoms
Solvent Atoms29
Heterogen Atoms58

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing