7ROL

Amyloid-related segment of alphaB-crystallin residues 90-100 with G95W mutation, bromo derivative


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5298diammonium phosphate, methyl-2,4-pentandiol
Crystal Properties
Matthews coefficientSolvent content
1.7630.11

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.93α = 90
b = 36.93β = 90
c = 24.9γ = 120
Symmetry
Space GroupP 64

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2020-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.92004APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.99631.98299.70.0970.10.99914.919.594137252.814
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.071001.7941.8430.6571.6119.067

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMADFREE R-VALUE1.99631.982137114299.6370.2970.29330.338159.927
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
15.07315.073-30.146
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg20.42
r_dihedral_angle_3_deg16.269
r_lrange_it13.121
r_lrange_other13.085
r_mcangle_it9.869
r_mcangle_other9.823
r_scangle_it9.156
r_scangle_other9.143
r_dihedral_angle_1_deg8.632
r_mcbond_other6.554
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg20.42
r_dihedral_angle_3_deg16.269
r_lrange_it13.121
r_lrange_other13.085
r_mcangle_it9.869
r_mcangle_other9.823
r_scangle_it9.156
r_scangle_other9.143
r_dihedral_angle_1_deg8.632
r_mcbond_other6.554
r_mcbond_it6.53
r_scbond_it5.908
r_scbond_other5.851
r_angle_refined_deg1.677
r_angle_other_deg1.007
r_nbd_other0.272
r_symmetry_xyhbond_nbd_refined0.255
r_symmetry_nbd_refined0.215
r_symmetry_nbd_other0.194
r_nbd_refined0.187
r_nbtor_refined0.179
r_xyhbond_nbd_refined0.175
r_symmetry_nbtor_other0.158
r_chiral_restr0.097
r_bond_refined_d0.008
r_gen_planes_refined0.008
r_xyhbond_nbd_other0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms188
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALEPACKdata scaling
MLPHAREphasing
DMphasing
PDB_EXTRACTdata extraction