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The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.025 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.2M MgCl2, 0.1M Tris Hcl pH8.5, 30%PEG4000 (JCSG core IV #21)
Crystal Properties Matthews coefficient Solvent content 2.03 39.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.665 α = 90 b = 57.399 β = 90 c = 81.195 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2017-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.025 34.24 95.5 0.02 0.999 19.6 6.8 95789 8.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.025 1.04 70.5 0.396 0.65 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.025 34.24 95720 4782 95.158 0.119 0.1177 0.1226 0.1441 0.1481 16.035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.134 -0.38 1.514
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.682 r_dihedral_angle_4_deg 28.729 r_rigid_bond_restr 14.257 r_dihedral_angle_3_deg 11.704 r_lrange_it 8.631 r_lrange_other 8.007 r_scangle_it 7.493 r_scangle_other 7.49 r_scbond_it 6.263 r_scbond_other 6.263
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.682 r_dihedral_angle_4_deg 28.729 r_rigid_bond_restr 14.257 r_dihedral_angle_3_deg 11.704 r_lrange_it 8.631 r_lrange_other 8.007 r_scangle_it 7.493 r_scangle_other 7.49 r_scbond_it 6.263 r_scbond_other 6.263 r_mcangle_it 6.157 r_mcangle_other 6.155 r_mcbond_other 5.569 r_mcbond_it 5.568 r_dihedral_angle_1_deg 5.361 r_angle_refined_deg 2.046 r_angle_other_deg 0.67 r_symmetry_nbd_refined 0.43 r_nbd_other 0.292 r_symmetry_xyhbond_nbd_refined 0.29 r_nbd_refined 0.274 r_xyhbond_nbd_refined 0.258 r_symmetry_nbd_other 0.192 r_nbtor_refined 0.182 r_chiral_restr 0.103 r_metal_ion_refined 0.092 r_symmetry_nbtor_other 0.07 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1659 Nucleic Acid Atoms Solvent Atoms 361 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXDE phasing