7R1C
Cryo-EM structure of Bacillus megaterium gas vesicles
ELECTRON MICROSCOPY
Sample |
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Helical assembly of GvpB monomers forming the gas vesicle wall |
Specimen Preparation | |
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Sample Aggregation State | HELICAL ARRAY |
Vitrification Instrument | LEICA PLUNGER |
Cryogen Name | ETHANE |
Sample Vitrification Details | Blot times between 5 and 11 seconds. |
3D Reconstruction | |
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Reconstruction Method | HELICAL |
Number of Particles | 1460 |
Reported Resolution (Å) | 3.2 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | Final reconstruction in cryoSPARC 3.3 using local refinement in a small section of the cylinder |
Refinement Type | |
Symmetry Type | HELICAL |
Axial Symmetry | C1 |
Axial Rise | 0.525 |
Angular Rotation | -3.874 |
Map-Model Fitting and Refinement | |||||
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Id | 1 | ||||
Refinement Space | REAL | ||||
Refinement Protocol | AB INITIO MODEL | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | GATAN K3 BIOQUANTUM (6k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 30 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 250 |
Maximum Defocus (nm) | 1250 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 64000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | RELION | 3.1 |
CTF CORRECTION | RELION | 3.1 |
FINAL EULER ASSIGNMENT | cryoSPARC | 3.3 |
CLASSIFICATION | RELION | 3.1 |
RECONSTRUCTION | cryoSPARC | 3.3 |
MODEL REFINEMENT | PHENIX | 1.13 |
MODEL REFINEMENT | ISOLDE |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 36295 |