X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP277PEG-4000, 0.2 M calcium acetate, 0.1 M Tris-HCl, pH 7.5.
Crystal Properties
Matthews coefficientSolvent content
2.8957.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.501α = 90
b = 89.501β = 90
c = 500.895γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2015-02-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.8726ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.511299.80.9975.871685
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.560.9861.56

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3JYI2.51067269357598.090.211330.209360.24829RANDOM56.997
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.530.53-1.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.691
r_dihedral_angle_3_deg15.277
r_dihedral_angle_4_deg13.115
r_dihedral_angle_1_deg6.609
r_long_range_B_refined4.53
r_long_range_B_other4.395
r_mcangle_it1.81
r_mcangle_other1.81
r_scangle_other1.687
r_angle_refined_deg1.484
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.691
r_dihedral_angle_3_deg15.277
r_dihedral_angle_4_deg13.115
r_dihedral_angle_1_deg6.609
r_long_range_B_refined4.53
r_long_range_B_other4.395
r_mcangle_it1.81
r_mcangle_other1.81
r_scangle_other1.687
r_angle_refined_deg1.484
r_angle_other_deg1.24
r_mcbond_it1.038
r_mcbond_other1.038
r_scbond_it0.973
r_scbond_other0.973
r_chiral_restr0.071
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12168
Nucleic Acid Atoms
Solvent Atoms760
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing