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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 295.15 0.1M Sodium citrate, pH 5.6; 20% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.24 45.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.412 α = 90 b = 108.36 β = 90 c = 123.902 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2018-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.9762 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 54.24 100 0.021 0.999 18 13.23 39368 28.434
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.76 100 0.494 0.759 1.5 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 1.73 54.239 39334 1927 99.952 0.185 0.1831 0.2133 0.2056 34.522
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.871 -2.881 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.796 r_dihedral_angle_4_deg 14.894 r_dihedral_angle_3_deg 12.842 r_dihedral_angle_1_deg 6.586 r_lrange_it 5.073 r_lrange_other 5.059 r_scangle_it 3.801 r_scangle_other 3.8 r_mcangle_it 2.79 r_mcangle_other 2.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.796 r_dihedral_angle_4_deg 14.894 r_dihedral_angle_3_deg 12.842 r_dihedral_angle_1_deg 6.586 r_lrange_it 5.073 r_lrange_other 5.059 r_scangle_it 3.801 r_scangle_other 3.8 r_mcangle_it 2.79 r_mcangle_other 2.79 r_scbond_it 2.361 r_scbond_other 2.336 r_mcbond_it 1.835 r_mcbond_other 1.832 r_angle_other_deg 1.294 r_angle_refined_deg 1.281 r_nbd_refined 0.206 r_nbd_other 0.186 r_symmetry_nbd_refined 0.181 r_symmetry_nbd_other 0.166 r_nbtor_refined 0.151 r_symmetry_xyhbond_nbd_refined 0.145 r_xyhbond_nbd_refined 0.13 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.06 r_symmetry_xyhbond_nbd_other 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2884 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing