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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND DIMETHOXYPHENYL ACETAMIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 295.15 0.1 M Sodium acetate pH 4.5; 20 % (w/v) PEG 8000; 0.2 M NaF
Crystal Properties Matthews coefficient Solvent content 2.2 44.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.262 α = 90 b = 86.432 β = 90 c = 137.833 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2021-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.9762 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 73.34 100 0.034 0.999 14.1 13.3 29415 53.437
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.349 0.776 2.5 13.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 2.4 73.333 29354 1466 99.966 0.199 0.197 0.1971 0.2298 0.2297 59.748
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.394 -0.769 3.162
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.753 r_dihedral_angle_3_deg 14.281 r_dihedral_angle_4_deg 12.658 r_dihedral_angle_1_deg 7.099 r_lrange_it 4.866 r_lrange_other 4.864 r_mcangle_it 3.158 r_mcangle_other 3.158 r_scangle_it 3.119 r_scangle_other 3.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.753 r_dihedral_angle_3_deg 14.281 r_dihedral_angle_4_deg 12.658 r_dihedral_angle_1_deg 7.099 r_lrange_it 4.866 r_lrange_other 4.864 r_mcangle_it 3.158 r_mcangle_other 3.158 r_scangle_it 3.119 r_scangle_other 3.118 r_angle_other_deg 2.325 r_mcbond_it 1.996 r_mcbond_other 1.996 r_scbond_it 1.904 r_scbond_other 1.904 r_angle_refined_deg 1.282 r_nbd_other 0.23 r_symmetry_nbd_other 0.219 r_symmetry_xyhbond_nbd_refined 0.207 r_nbd_refined 0.188 r_nbtor_refined 0.146 r_symmetry_nbd_refined 0.145 r_xyhbond_nbd_refined 0.133 r_ncsr_local_group_1 0.076 r_symmetry_nbtor_other 0.06 r_chiral_restr 0.052 r_bond_other_d 0.036 r_gen_planes_other 0.005 r_bond_refined_d 0.004 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5692 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing