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VHH Z70 in interaction with PHF6 Tau peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OL0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 0.17 M ammonium sulfate, 25.5% PEG 4000, 15% glycerol
Crystal Properties Matthews coefficient Solvent content 3.26 62.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.469 α = 90 b = 135.469 β = 90 c = 35.579 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER X 16M 2021-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9801 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44.382 100 0.202 0.207 0.045 0.999 16 39.5 21730
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 9.833 10.07 2.166 0.777 40.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1ol0 1.7 44.382 21711 1086 99.986 0.196 0.1954 0.2142 0.2076 29.768
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.895 0.448 0.895 -2.905
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.672 r_dihedral_angle_4_deg 18.567 r_dihedral_angle_3_deg 12.954 r_lrange_it 8.379 r_lrange_other 8.319 r_dihedral_angle_1_deg 6.902 r_scangle_it 6.201 r_scangle_other 6.201 r_mcangle_it 4.616 r_mcangle_other 4.613
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.672 r_dihedral_angle_4_deg 18.567 r_dihedral_angle_3_deg 12.954 r_lrange_it 8.379 r_lrange_other 8.319 r_dihedral_angle_1_deg 6.902 r_scangle_it 6.201 r_scangle_other 6.201 r_mcangle_it 4.616 r_mcangle_other 4.613 r_scbond_it 4.186 r_scbond_other 4.182 r_mcbond_it 3.024 r_mcbond_other 2.987 r_angle_refined_deg 1.841 r_angle_other_deg 1.467 r_nbd_refined 0.21 r_nbd_other 0.2 r_symmetry_nbd_other 0.187 r_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.171 r_symmetry_nbtor_other 0.087 r_chiral_restr 0.076 r_symmetry_nbd_refined 0.07 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 912 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing