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HisF-C9A-D11E-V33A_L50H_I52H mutant in complex with Zn(II) from T. maritima
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7QC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 292 100 mM TRIS, 23% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.68 α = 90 b = 96.68 β = 90 c = 154.42 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 97.4 0.066 25.3 12.1 39147
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.4 0.596 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7QC3 1.8 15 37106 1953 97.2 0.1393 0.1382 0.1527 0.1592 0.17 RANDOM 28.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 0.25 0.49 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.217 r_sphericity_free 19.365 r_dihedral_angle_4_deg 16.892 r_sphericity_bonded 10.752 r_dihedral_angle_3_deg 10.132 r_dihedral_angle_1_deg 5.105 r_rigid_bond_restr 1.497 r_angle_refined_deg 1.275 r_angle_other_deg 0.887 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.217 r_sphericity_free 19.365 r_dihedral_angle_4_deg 16.892 r_sphericity_bonded 10.752 r_dihedral_angle_3_deg 10.132 r_dihedral_angle_1_deg 5.105 r_rigid_bond_restr 1.497 r_angle_refined_deg 1.275 r_angle_other_deg 0.887 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1929 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling REFMAC phasing