7Q7P | pdb_00007q7p

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2I5N

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	LIPIDIC CUBIC PHASE		293	60:40 monoolein with UQ2, protein 40 mg/mL concentration.

Crystal Properties
Matthews coefficient	Solvent content
3.62	65.98

Symmetry
Space Group	P 21 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	CCD	MPCCD		2018-11-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SACLA BEAMLINE BL2	1.4	SACLA	BL2

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	73.92	100	0.994	0.1057	7.87	7.05		76977

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.42			0.42

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2I5N	2.4	73.92	73189	3808	100	0.167	0.1648	0.175	0.2044	0.2073	49

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.782			1.757		-2.538

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.859
r_dihedral_angle_4_deg	20.526
r_dihedral_angle_3_deg	16.288
r_lrange_it	7.782
r_lrange_other	7.782
r_dihedral_angle_1_deg	6.89
r_dihedral_angle_other_3_deg	6.571
r_scangle_it	5.679
r_scangle_other	5.678
r_mcangle_it	4.719

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.859
r_dihedral_angle_4_deg	20.526
r_dihedral_angle_3_deg	16.288
r_lrange_it	7.782
r_lrange_other	7.782
r_dihedral_angle_1_deg	6.89
r_dihedral_angle_other_3_deg	6.571
r_scangle_it	5.679
r_scangle_other	5.678
r_mcangle_it	4.719
r_mcangle_other	4.719
r_scbond_it	3.589
r_scbond_other	3.589
r_mcbond_it	3.112
r_mcbond_other	3.11
r_angle_refined_deg	2.152
r_angle_other_deg	1.239
r_nbd_refined	0.195
r_nbd_other	0.194
r_symmetry_nbd_other	0.177
r_nbtor_refined	0.17
r_xyhbond_nbd_refined	0.146
r_symmetry_nbd_refined	0.143
r_symmetry_xyhbond_nbd_refined	0.092
r_chiral_restr	0.08
r_symmetry_nbtor_other	0.079
r_symmetry_xyhbond_nbd_other	0.033
r_bond_refined_d	0.014
r_gen_planes_refined	0.008
r_gen_planes_other	0.004
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9270
Nucleic Acid Atoms
Solvent Atoms	244
Heterogen Atoms	912

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.