☰ Navigation Tabs
Beta-lactoglobulin mutant FAW (I56F/L39A/M107W), unliganded form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.40 M ammonium sulfate, 0.5 M Tris-HCl pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.48 50.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.083 α = 90 b = 53.083 β = 90 c = 111.469 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2019-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91840 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.97 99.8 0.057 0.999 13.73 4.31 17450
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 99.1 0.972 0.59 1.3 4.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 1.8 45.971 17448 1000 99.652 0.185 0.183 0.1931 0.2264 0.2312 40.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.125 0.062 0.125 -0.405
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.44 r_dihedral_angle_3_deg 14.242 r_dihedral_angle_4_deg 8.308 r_dihedral_angle_1_deg 7.357 r_lrange_it 7.002 r_lrange_other 7.002 r_scangle_it 5.064 r_scangle_other 5.061 r_mcangle_it 3.425 r_mcangle_other 3.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.44 r_dihedral_angle_3_deg 14.242 r_dihedral_angle_4_deg 8.308 r_dihedral_angle_1_deg 7.357 r_lrange_it 7.002 r_lrange_other 7.002 r_scangle_it 5.064 r_scangle_other 5.061 r_mcangle_it 3.425 r_mcangle_other 3.424 r_scbond_it 3.159 r_scbond_other 3.157 r_mcbond_it 2.318 r_mcbond_other 2.308 r_angle_refined_deg 1.619 r_angle_other_deg 1.317 r_nbd_other 0.277 r_symmetry_nbd_refined 0.239 r_symmetry_xyhbond_nbd_refined 0.199 r_nbd_refined 0.194 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.082 r_symmetry_xyhbond_nbd_other 0.052 r_xyhbond_nbd_other 0.052 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1251 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing