☰ Navigation Tabs
Human Carbonic Anhydrase II in complex with Methyl 2-(benzenesulfonyl)-4-chloro-5-sulfamoylbenzoate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 Crystallization buffer: 0.1M sodium bicine (pH 9.0), 0.2 M ammonium sulfate and 2M sodium malonate (pH 7.0)
Crystal Properties Matthews coefficient Solvent content 2.09 41.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.161 α = 90 b = 41.347 β = 104.26 c = 71.99 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.9797 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 69.77 96.8 0.086 0.1 0.038 13.3 6.9 57251 57251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 94.6 0.354 0.354 0.409 0.153 1.7 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HT0 1.3 40.86 51596 5612 96.38 0.1303 0.1261 0.1267 0.1691 0.1691 RANDOM 12.855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.1 0.07 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.468 r_sphericity_free 24.771 r_dihedral_angle_4_deg 21.63 r_sphericity_bonded 13.775 r_dihedral_angle_3_deg 12.185 r_rigid_bond_restr 6.98 r_dihedral_angle_1_deg 6.748 r_angle_refined_deg 2.304 r_chiral_restr 0.167 r_bond_refined_d 0.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.468 r_sphericity_free 24.771 r_dihedral_angle_4_deg 21.63 r_sphericity_bonded 13.775 r_dihedral_angle_3_deg 12.185 r_rigid_bond_restr 6.98 r_dihedral_angle_1_deg 6.748 r_angle_refined_deg 2.304 r_chiral_restr 0.167 r_bond_refined_d 0.025 r_gen_planes_refined 0.018
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2043 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing Coot model building