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LPMO, expressed in E.coli, in complex with Cellotetraose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ACH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4.2 277 2.3 M ammonium sulfate, 0.1 M sodium acetate pH 4.2.
Crystals were soaked in 0.05 M cellotetraose in crystallization conditions with 18% glycerol for 30 min.
Crystal Properties Matthews coefficient Solvent content 2.57 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.77 α = 90 b = 48.77 β = 90 c = 109.32 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.98 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 44.58 99.6 0.117 0.999 12.07 13.62 49868
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 99.7 3.417 0.55 13.57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5ACH 1.4 44.58 47376 2492 99.56 0.1193 0.1171 0.1174 0.1598 0.1603 RANDOM 21.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.97 -1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.875 r_dihedral_angle_4_deg 17.926 r_dihedral_angle_3_deg 8.478 r_dihedral_angle_1_deg 6.855 r_rigid_bond_restr 3.97 r_angle_refined_deg 1.837 r_angle_other_deg 1.544 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.875 r_dihedral_angle_4_deg 17.926 r_dihedral_angle_3_deg 8.478 r_dihedral_angle_1_deg 6.855 r_rigid_bond_restr 3.97 r_angle_refined_deg 1.837 r_angle_other_deg 1.544 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1782 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 75
Software Software Software Name Purpose autoPROC data reduction autoPROC data scaling REFMAC refinement PDB_EXTRACT data extraction