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Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TUA 3TUA, 2ZU6, 2G9N experimental model PDB 2ZU6 3TUA, 2ZU6, 2G9N experimental model PDB 2G9N 3TUA, 2ZU6, 2G9N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 290 0.1 M HEPES, 4 % (w/v)
PEG 6000
Crystal Properties Matthews coefficient Solvent content 4.38 71.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 199.53 α = 90 b = 199.53 β = 90 c = 51.34 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9762 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 65.31 99.7 0.041 0.044 0.015 0.999 34.9 8.4 23808
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.08 97.9 0.216 0.23 0.078 0.988 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TUA, 2ZU6, 2G9N 3 65.31 22590 1208 99.66 0.1883 0.186 0.1883 0.2298 0.2297 RANDOM 95.016
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 0.26 0.53 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.506 r_dihedral_angle_4_deg 15.413 r_dihedral_angle_3_deg 15.034 r_dihedral_angle_1_deg 4.366 r_angle_refined_deg 1.551 r_angle_other_deg 0.949 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.506 r_dihedral_angle_4_deg 15.413 r_dihedral_angle_3_deg 15.034 r_dihedral_angle_1_deg 4.366 r_angle_refined_deg 1.551 r_angle_other_deg 0.949 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4716 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction