☰ Navigation Tabs
TNKS2 in complex with OM-1700, treated with H2O2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 297.15 PEG6000, Bicine, pH = 8.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.64 α = 90 b = 76.44 β = 90 c = 147.79 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.3 0.998 10.64 13.3 16930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 0.899
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5NOB 2.5 41.443 16930 847 99.331 0.25 0.2479 0.2501 0.2802 0.2872 55.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.444 7.655 -7.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.957 r_dihedral_angle_3_deg 12.06 r_dihedral_angle_4_deg 9.4 r_dihedral_angle_1_deg 6.318 r_lrange_it 5.048 r_lrange_other 5.048 r_mcangle_it 3.526 r_mcangle_other 3.525 r_scangle_it 2.578 r_scangle_other 2.577
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.957 r_dihedral_angle_3_deg 12.06 r_dihedral_angle_4_deg 9.4 r_dihedral_angle_1_deg 6.318 r_lrange_it 5.048 r_lrange_other 5.048 r_mcangle_it 3.526 r_mcangle_other 3.525 r_scangle_it 2.578 r_scangle_other 2.577 r_mcbond_it 1.951 r_mcbond_other 1.948 r_scbond_it 1.389 r_scbond_other 1.389 r_angle_refined_deg 1.165 r_angle_other_deg 1.055 r_symmetry_nbd_other 0.175 r_nbd_refined 0.161 r_nbtor_refined 0.16 r_nbd_other 0.152 r_xyhbond_nbd_refined 0.135 r_symmetry_nbd_refined 0.132 r_symmetry_xyhbond_nbd_refined 0.095 r_symmetry_nbtor_other 0.07 r_symmetry_xyhbond_nbd_other 0.049 r_chiral_restr 0.035 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3075 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing