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Hydrogenated refolded hen egg-white lysozyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AVE pdbid 7ave
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.5 291 0.05 M sodium acetate pH 4.5, 0.3 M sodium nitrate, micro seeds of G. gallus HEWL
Crystal Properties Matthews coefficient Solvent content 1.64 24.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.12 α = 88.97 b = 30.7 β = 72.77 c = 33.54 γ = 69.5
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.700001 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.89 22.46 96.2 0.083 0.098 0.052 0.996 7.4 3.4 68446 7.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.89 0.92 94.3 0.647 0.762 0.398 0.799 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE pdbid 7ave 0.89 22.46 65023 3423 96.2 0.1251 0.1531 13.9443
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1005 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 40
Software Software Software Name Purpose SHELX refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction PHENIX phasing