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Soluble epoxide hydrolase in complex with FL217
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 28 % (w/v) polyethylenglycol (PEG) 6000, 70 mM ammonium acetat, 200 mM magnesium acetat, 100 mM sodium cacodylate at pH 6.13
Crystal Properties Matthews coefficient Solvent content 2.27 45.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.82 α = 90 b = 79.326 β = 126.65 c = 88.599 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00004 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 44.02 92 0.996 7.4 2.5 35542
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.22 0.835 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6FR2 2.15 44.02 33693 1811 91.65 0.1796 0.1772 0.1853 0.2231 0.2297 RANDOM 49.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.84 1.75 -5.72 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.903 r_dihedral_angle_4_deg 16.605 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 8.465 r_angle_other_deg 1.192 r_angle_refined_deg 1.169 r_chiral_restr 0.063 r_bond_refined_d 0.013 r_gen_planes_refined 0.013 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.903 r_dihedral_angle_4_deg 16.605 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 8.465 r_angle_other_deg 1.192 r_angle_refined_deg 1.169 r_chiral_restr 0.063 r_bond_refined_d 0.013 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4865 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 76
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing