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Crystal structure of PPARgamma in complex with compound FL217
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 1.4M Ammonium sulfate, 0.1M Tris pH7.5
Crystal Properties Matthews coefficient Solvent content 2.63 53.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.013 α = 90 b = 63.013 β = 90 c = 167.621 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 44.6 99.6 0.998 18.5 9.3 13878
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 0.737
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6TSG 2.4 44.6 13176 662 99.19 0.2313 0.2293 0.23 0.2684 0.2641 RANDOM 86.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 1.28 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.735 r_dihedral_angle_4_deg 19.764 r_dihedral_angle_3_deg 16.581 r_dihedral_angle_1_deg 6.589 r_angle_other_deg 1.14 r_angle_refined_deg 1.086 r_chiral_restr 0.046 r_gen_planes_refined 0.011 r_bond_refined_d 0.01 r_gen_planes_other 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.735 r_dihedral_angle_4_deg 19.764 r_dihedral_angle_3_deg 16.581 r_dihedral_angle_1_deg 6.589 r_angle_other_deg 1.14 r_angle_refined_deg 1.086 r_chiral_restr 0.046 r_gen_planes_refined 0.011 r_bond_refined_d 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1949 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 67
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing