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Carbonic anhydrase II in complex with Hit3-t4 (MH181)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PO6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.09 41.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.272 α = 90 b = 41.218 β = 104.51 c = 72.483 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 40.92 88.5 0.067 0.079 0.996 9.88 3.566 76454 16.136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.22 52.9 0.468 0.578 0.783 2.11 2.776
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3PO6 1.15 40.92 74160 2294 88.55 0.124 0.1232 0.1237 0.1507 0.1488 RANDOM 16.213
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.3 -0.8 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.204 r_dihedral_angle_4_deg 26.267 r_dihedral_angle_3_deg 11.187 r_dihedral_angle_1_deg 7.202 r_rigid_bond_restr 3.306 r_angle_refined_deg 1.719 r_angle_other_deg 1.5 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.204 r_dihedral_angle_4_deg 26.267 r_dihedral_angle_3_deg 11.187 r_dihedral_angle_1_deg 7.202 r_rigid_bond_restr 3.306 r_angle_refined_deg 1.719 r_angle_other_deg 1.5 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2030 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 51
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction FFT phasing