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Crystal structure of AP2 Mu2 in complex with FCHO2 WxxPhi motif (C2 crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 30mM Magnesium chloride hexahydrate, 30mM Calcium chloride dihydrate, 100mM Sodium HEPES MOPS (acid) pH 7.5, 20% v/v Ethylene glycol; 10 % w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.84 56.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.888 α = 90 b = 64.539 β = 111.95 c = 108.439 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97950 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 55.7 89.4 0.091 0.099 0.039 9.7 6.1 58302 32.287
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 49.1 1.064 1.221 0.577 1.1 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE Phaser 1.85 55.7 58295 2932 89.401 0.187 0.1859 0.195 0.2087 0.2148 38.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.632 0.678 -1.099 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.974 r_dihedral_angle_4_deg 20.819 r_dihedral_angle_3_deg 16.469 r_lrange_it 9.136 r_lrange_other 9.104 r_dihedral_angle_1_deg 8.382 r_scangle_it 7.094 r_scangle_other 7.093 r_mcangle_other 4.941 r_mcangle_it 4.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.974 r_dihedral_angle_4_deg 20.819 r_dihedral_angle_3_deg 16.469 r_lrange_it 9.136 r_lrange_other 9.104 r_dihedral_angle_1_deg 8.382 r_scangle_it 7.094 r_scangle_other 7.093 r_mcangle_other 4.941 r_mcangle_it 4.937 r_scbond_it 4.693 r_scbond_other 4.693 r_mcbond_it 3.493 r_mcbond_other 3.466 r_angle_refined_deg 1.658 r_angle_other_deg 1.255 r_symmetry_nbd_other 0.183 r_nbd_refined 0.169 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.159 r_symmetry_nbd_refined 0.156 r_nbd_other 0.112 r_symmetry_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.075 r_symmetry_xyhbond_nbd_other 0.057 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4254 Nucleic Acid Atoms Solvent Atoms 350 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement DIALS data scaling PHASER phasing DIALS data reduction