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conserved hypothetical protein residues 311-335 from Candidatus Magnetomorum sp. HK-1 fused to GCN4 adaptors, mutant beta1/A, crystal form III
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.1M tri-sodium citrate pH 4.5, 9.3% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.14 42.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.01 α = 90 b = 38.849 β = 96.178 c = 128.811 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2020-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9998 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 33.214 99.8 0.083 1 11.32 6.62 45592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.54 99.4 0.835 0.96 1.77 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7OAA 1.45 33.214 45563 2279 99.724 0.199 0.1983 0.1997 0.215 0.2174 30.036
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.339 1.809 0.3 -0.344
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.897 r_dihedral_angle_4_deg 20.476 r_dihedral_angle_3_deg 14.588 r_lrange_it 7.532 r_lrange_other 7.479 r_scangle_it 4.908 r_scangle_other 4.907 r_dihedral_angle_1_deg 3.946 r_scbond_it 3.191 r_scbond_other 3.189
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.897 r_dihedral_angle_4_deg 20.476 r_dihedral_angle_3_deg 14.588 r_lrange_it 7.532 r_lrange_other 7.479 r_scangle_it 4.908 r_scangle_other 4.907 r_dihedral_angle_1_deg 3.946 r_scbond_it 3.191 r_scbond_other 3.189 r_mcangle_it 2.111 r_mcangle_other 2.11 r_angle_refined_deg 1.654 r_mcbond_it 1.541 r_mcbond_other 1.536 r_angle_other_deg 1.396 r_symmetry_nbd_refined 0.293 r_nbd_refined 0.257 r_nbd_other 0.229 r_nbtor_refined 0.197 r_xyhbond_nbd_refined 0.182 r_ncsr_local_group_2 0.169 r_symmetry_nbd_other 0.154 r_symmetry_xyhbond_nbd_refined 0.154 r_ncsr_local_group_3 0.15 r_ncsr_local_group_1 0.148 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.084 r_symmetry_xyhbond_nbd_other 0.031 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2034 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing