7OAA | pdb_00007oaa

conserved hypothetical protein residues 311-335 from Candidatus Magnetomorum sp. HK-1 fused to GCN4 adaptors

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5APT

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	0.1M HEPES pH 7.5, 30% (w/v) PEG 300

Crystal Properties
Matthews coefficient	Solvent content
1.94	36.65

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 38.243	α = 90
b = 38.243	β = 90
c = 279.665	γ = 120

Symmetry
Space Group	H 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2016-08-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	1.0704	SLS	X10SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	32.89	91.5	0.054	1	24.3	17.6		10751

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.47			0.662	0.978	3.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5apt	1.4	32.89	10751	535	65.981	0.233	0.2308	0.23	0.2685	0.27	18.816

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.29	0.145		0.29		-0.939

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	41.536
r_dihedral_angle_3_deg	12.667
r_dihedral_angle_4_deg	8.089
r_lrange_it	6.123
r_lrange_other	6.05
r_dihedral_angle_1_deg	4.029
r_scangle_it	3.834
r_scangle_other	3.821
r_scbond_it	2.308
r_mcangle_other	2.275
r_scbond_other	2.266
r_mcangle_it	2.218
r_mcbond_it	1.368
r_mcbond_other	1.248
r_angle_refined_deg	0.687
r_angle_other_deg	0.596
r_nbd_refined	0.202
r_nbtor_refined	0.174
r_symmetry_nbd_refined	0.141
r_symmetry_nbd_other	0.134
r_xyhbond_nbd_refined	0.122
r_nbd_other	0.101
r_symmetry_nbtor_other	0.072
r_symmetry_xyhbond_nbd_refined	0.052
r_chiral_restr	0.037
r_bond_refined_d	0.004
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	692
Nucleic Acid Atoms
Solvent Atoms	91
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
STARANISO	data scaling
MOLREP	phasing