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Crystal structure of the Awp3b (adhesin-like wall protein 3b) A-domain from Candida glabrata showing a gadolinium cluster
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291.15 0.2 M magnesium chloride, 0.1 M Tris pH 7.0, 3.0 M sodium chloride
crystals soaked with 50 mM gadolinium (III) acetate
Crystal Properties Matthews coefficient Solvent content 2.95 58.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.397 α = 90 b = 144.397 β = 90 c = 113.95 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.71237 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 84.2 99.8 0.104 0.107 0.025 0.998 18.8 18.2 30650
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.4 0.549 0.567 0.138 0.807 16.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 27.42 29914 1508 99.9 0.1705 0.1685 0.1691 0.2099 0.2094 RANDOM 32.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.23 0.47 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.072 r_dihedral_angle_4_deg 21.47 r_dihedral_angle_3_deg 14.332 r_dihedral_angle_1_deg 7.688 r_angle_refined_deg 1.689 r_angle_other_deg 1.375 r_chiral_restr 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.072 r_dihedral_angle_4_deg 21.47 r_dihedral_angle_3_deg 14.332 r_dihedral_angle_1_deg 7.688 r_angle_refined_deg 1.689 r_angle_other_deg 1.375 r_chiral_restr 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2309 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 41
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction CRANK2 phasing XDS data reduction