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diFe-sulerythrin oxidised by H2O2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J30
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291.15 0.1 M Bis-Tris (pH 5.5) and 20-25% (w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.971 α = 90 b = 71.971 β = 90 c = 99.814 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.12 38.96 95.78 0.999 12.7 9.75 108298
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.12 1.16 0.486
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1J30 1.12 38.96 106197 2100 95.77 0.13747 0.13684 0.1367 0.16949 0.1686 RANDOM 15.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.32 -0.64 2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.35 r_dihedral_angle_4_deg 17.301 r_dihedral_angle_3_deg 12.81 r_dihedral_angle_1_deg 4.495 r_rigid_bond_restr 2.761 r_long_range_B_refined 2.663 r_long_range_B_other 2.386 r_scangle_other 2.332 r_scbond_it 2.043 r_scbond_other 2.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.35 r_dihedral_angle_4_deg 17.301 r_dihedral_angle_3_deg 12.81 r_dihedral_angle_1_deg 4.495 r_rigid_bond_restr 2.761 r_long_range_B_refined 2.663 r_long_range_B_other 2.386 r_scangle_other 2.332 r_scbond_it 2.043 r_scbond_other 2.043 r_angle_refined_deg 1.909 r_angle_other_deg 1.685 r_mcangle_other 1.389 r_mcangle_it 1.381 r_mcbond_it 1.152 r_mcbond_other 1.142 r_chiral_restr 0.112 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2276 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing