7O6X

Tankyrase 2 in complex with an inhibitor (OM-153)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295.1522.5% PEG6000, Bicine pH=8.75
Crystal Properties
Matthews coefficientSolvent content
2.3547.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.39α = 90
b = 76.43β = 90
c = 147.73γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2019-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.97949DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2501000.9967.5313.3624609
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.260.841

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.241.4324609123199.9630.2140.21120.258238.595
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.4830.563-4.047
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31
r_dihedral_angle_4_deg14.978
r_dihedral_angle_3_deg13.193
r_dihedral_angle_1_deg6.708
r_lrange_it4.336
r_lrange_other4.317
r_mcangle_it2.604
r_mcangle_other2.603
r_scangle_it2.579
r_scangle_other2.578
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31
r_dihedral_angle_4_deg14.978
r_dihedral_angle_3_deg13.193
r_dihedral_angle_1_deg6.708
r_lrange_it4.336
r_lrange_other4.317
r_mcangle_it2.604
r_mcangle_other2.603
r_scangle_it2.579
r_scangle_other2.578
r_mcbond_it1.5
r_mcbond_other1.5
r_scbond_it1.499
r_scbond_other1.498
r_angle_refined_deg1.197
r_angle_other_deg1.078
r_nbd_refined0.162
r_symmetry_nbd_other0.162
r_nbtor_refined0.16
r_symmetry_nbd_refined0.148
r_nbd_other0.138
r_xyhbond_nbd_refined0.129
r_symmetry_xyhbond_nbd_refined0.121
r_symmetry_nbtor_other0.068
r_chiral_restr0.04
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3217
Nucleic Acid Atoms
Solvent Atoms124
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing