7O2I

METTL3-METTL14 heterodimer bound to the SAM competitive small molecule inhibitor STM2457


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8295150 mM magnesium acetate, 22% w/v PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.2445.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.094α = 90
b = 64.094β = 90
c = 225.302γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-01-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1349.7951000.2740.99612.219.711480
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.181001.80.6972.715

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5L6D349.7951143250899.9560.1890.18590.262660.364
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.463-0.731-1.4634.745
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.741
r_dihedral_angle_3_deg19.605
r_dihedral_angle_4_deg17.413
r_dihedral_angle_1_deg8.673
r_lrange_it8.17
r_lrange_other8.169
r_mcangle_it5.202
r_mcangle_other5.202
r_scangle_it4.99
r_scangle_other4.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.741
r_dihedral_angle_3_deg19.605
r_dihedral_angle_4_deg17.413
r_dihedral_angle_1_deg8.673
r_lrange_it8.17
r_lrange_other8.169
r_mcangle_it5.202
r_mcangle_other5.202
r_scangle_it4.99
r_scangle_other4.99
r_mcbond_it3.117
r_mcbond_other3.104
r_scbond_it3.037
r_scbond_other3.037
r_angle_refined_deg1.287
r_angle_other_deg1.135
r_nbd_refined0.235
r_symmetry_nbd_other0.225
r_nbd_other0.216
r_xyhbond_nbd_refined0.181
r_nbtor_refined0.178
r_symmetry_nbd_refined0.115
r_symmetry_xyhbond_nbd_refined0.113
r_symmetry_nbtor_other0.083
r_symmetry_xyhbond_nbd_other0.058
r_chiral_restr0.055
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3580
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing