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Three-quartet c-kit2 G-quadruplex stabilized by a pyrene conjugate
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.0 mM c-kit2_py1, 5 mM potassium phosphate, 20 mM potassium chloride 90% H2O/10% D2O 25 mM 7.0 1 atm 298 Bruker Bruker AVANCE NEO 600 MHz NMR spectrometer 600 2 2D 1H-13C HSQC 1.0 mM c-kit2_py1, 5 mM potassium phosphate, 20 mM potassium chloride 90% H2O/10% D2O 25 mM 7.0 1 atm 298 Bruker Bruker AVANCE NEO 600 MHz NMR spectrometer 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker Bruker AVANCE NEO 600 MHz NMR spectrometer 600
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 4.0.7 Bruker Biospin 2 chemical shift assignment NMRFAM-SPARKY Lee W, Tonelli M, Markley JL 3 structure calculation Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 5 peak picking NMRFAM-SPARKY Lee W, Tonelli M, Markley JL