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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 6-benzyl-N2-methyl-N4-((1S,2S)-2-methylcyclopropyl)pyridine-2,4-dicarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.047 α = 90 b = 52.31 β = 90 c = 32.087 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU 2014-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 52.31 95.5 0.018 0.999 36.8 2.9 15851
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 75.2 0.094 0.89 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.601 14.656 15752 774 94.829 0.147 0.1459 0.1731 0.1865 20.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.249 -0.192 0.441
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.057 r_dihedral_angle_4_deg 20.322 r_dihedral_angle_3_deg 10.917 r_lrange_it 5.208 r_lrange_other 5.009 r_dihedral_angle_1_deg 4.731 r_scangle_it 2.54 r_scangle_other 2.538 r_mcangle_other 1.804 r_mcangle_it 1.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.057 r_dihedral_angle_4_deg 20.322 r_dihedral_angle_3_deg 10.917 r_lrange_it 5.208 r_lrange_other 5.009 r_dihedral_angle_1_deg 4.731 r_scangle_it 2.54 r_scangle_other 2.538 r_mcangle_other 1.804 r_mcangle_it 1.797 r_scbond_it 1.511 r_scbond_other 1.51 r_angle_other_deg 1.34 r_angle_refined_deg 1.235 r_mcbond_it 1.064 r_mcbond_other 1.01 r_nbd_refined 0.208 r_nbtor_refined 0.174 r_symmetry_nbd_other 0.169 r_symmetry_nbd_refined 0.165 r_nbd_other 0.121 r_xyhbond_nbd_refined 0.094 r_symmetry_xyhbond_nbd_refined 0.082 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.067 r_symmetry_xyhbond_nbd_other 0.017 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 912 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling