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ROR(gamma)t ligand binding domain in complex with allosteric ligand FM156
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293.15 1.6 M AmSO4, 0.1 M Tris
Crystal Properties Matthews coefficient Solvent content 2.98 58.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.603 α = 90 b = 107.603 β = 90 c = 100.205 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033210 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 68.24 100 1 25.7 113.1 58535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.5 0.382
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6sal 1.47 53.86 55631 2842 99.99 0.16977 0.16841 0.1967 0.2142 RANDOM 31.724
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.12 -0.24 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.072 r_dihedral_angle_4_deg 19.744 r_dihedral_angle_3_deg 12.345 r_dihedral_angle_1_deg 5.17 r_long_range_B_refined 3.805 r_long_range_B_other 3.755 r_scangle_other 3.314 r_scbond_it 2.633 r_scbond_other 2.633 r_mcangle_it 2.537
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.072 r_dihedral_angle_4_deg 19.744 r_dihedral_angle_3_deg 12.345 r_dihedral_angle_1_deg 5.17 r_long_range_B_refined 3.805 r_long_range_B_other 3.755 r_scangle_other 3.314 r_scbond_it 2.633 r_scbond_other 2.633 r_mcangle_it 2.537 r_mcangle_other 2.536 r_mcbond_it 1.946 r_mcbond_other 1.931 r_rigid_bond_restr 1.869 r_angle_other_deg 1.421 r_angle_refined_deg 1.32 r_chiral_restr 0.077 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1972 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing