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Se-CrtE N-term His-tag structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7MY6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 200 nL of protein at 10 mg/mL was added to 200 nL of reservoir containing 22.6% (w/v) polyacrylic acid 2100, 1.0% ethylammonium nitrate and 10% (v/v) DL-malate-MES-tris buffer at pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.25 45.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.512 α = 90 b = 56.443 β = 100.377 c = 144.812 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 48.65 99.5 0.144 0.083 0.997 8.6 6.8 51379
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.43 95.1 1.578 0.659 0.553 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7MY6 2.36 48.65 51377 2566 99.525 0.22 0.2184 0.2255 0.2469 0.2503 65.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 2.614 -1.411 0.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.596 r_dihedral_angle_3_deg 16.348 r_dihedral_angle_4_deg 15.042 r_lrange_other 11.712 r_lrange_it 11.708 r_scangle_other 8.258 r_scangle_it 8.257 r_mcangle_it 7.273 r_mcangle_other 7.272 r_scbond_it 5.485
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.596 r_dihedral_angle_3_deg 16.348 r_dihedral_angle_4_deg 15.042 r_lrange_other 11.712 r_lrange_it 11.708 r_scangle_other 8.258 r_scangle_it 8.257 r_mcangle_it 7.273 r_mcangle_other 7.272 r_scbond_it 5.485 r_scbond_other 5.48 r_mcbond_it 5.065 r_mcbond_other 5.055 r_dihedral_angle_1_deg 5.05 r_angle_refined_deg 1.371 r_angle_other_deg 1.347 r_symmetry_nbd_refined 0.386 r_nbd_other 0.339 r_nbd_refined 0.21 r_symmetry_nbd_other 0.183 r_symmetry_xyhbond_nbd_refined 0.162 r_xyhbond_nbd_refined 0.16 r_nbtor_refined 0.15 r_ncsr_local_group_3 0.088 r_symmetry_nbtor_other 0.085 r_ncsr_local_group_1 0.082 r_ncsr_local_group_5 0.08 r_chiral_restr 0.069 r_ncsr_local_group_4 0.065 r_ncsr_local_group_2 0.064 r_ncsr_local_group_6 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7489 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing