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Crystal structure of human BAZ2A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C2I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 2.0M Sodium Formate, 0.1M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.83 56.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.86 α = 90 b = 47.86 β = 90 c = 238.861 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979237 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 47.77 100 0.064 0.067 0.015 1 34.5 20.1 17590
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 100 1.14 1.194 0.258 0.939 20.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3C2I 1.8 41.45 15299 805 99.88 0.1857 0.1842 0.1968 0.2127 0.2197 RANDOM 33.576
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.28 0.57 -1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.015 r_dihedral_angle_4_deg 13.244 r_dihedral_angle_3_deg 11.691 r_dihedral_angle_1_deg 6.038 r_angle_refined_deg 1.933 r_angle_other_deg 0.868 r_chiral_restr 0.113 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.015 r_dihedral_angle_4_deg 13.244 r_dihedral_angle_3_deg 11.691 r_dihedral_angle_1_deg 6.038 r_angle_refined_deg 1.933 r_angle_other_deg 0.868 r_chiral_restr 0.113 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 907 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 11
Software Software Software Name Purpose Aimless data scaling REFMAC refinement HKL-2000 data processing PDB_EXTRACT data extraction PHASER phasing