☰ Navigation Tabs
human carbonic anhydrase 9 mimic with compound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5G03
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Protein at 5.9 mg/mL; 200 nL plus 200 nL drops with the reservoir being 2.7 M ammonium sulfate and 50 mM Tris buffer at pH 8.2
Crystal Properties Matthews coefficient Solvent content 2.09 41.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.016 α = 90 b = 41.612 β = 103.844 c = 72.053 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953733026981 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 41.61 98.5 0.066 0.027 0.998 16.2 6.7 52509
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 78.6 0.412 0.205 0.9 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5g03 1.35 40.829 52492 2575 98.486 0.121 0.1192 0.1188 0.1475 0.1476 15.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.032 0.625 -0.157 -0.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.142 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 13.275 r_dihedral_angle_1_deg 6.83 r_lrange_it 3.168 r_lrange_other 3.027 r_scangle_it 2.623 r_scangle_other 2.614 r_scbond_it 2.204 r_scbond_other 2.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.142 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 13.275 r_dihedral_angle_1_deg 6.83 r_lrange_it 3.168 r_lrange_other 3.027 r_scangle_it 2.623 r_scangle_other 2.614 r_scbond_it 2.204 r_scbond_other 2.199 r_mcangle_it 2.101 r_mcangle_other 2.101 r_angle_refined_deg 1.651 r_mcbond_it 1.616 r_mcbond_other 1.602 r_rigid_bond_restr 1.493 r_angle_other_deg 1.456 r_symmetry_nbd_refined 0.54 r_symmetry_xyhbond_nbd_other 0.319 r_nbd_refined 0.291 r_xyhbond_nbd_refined 0.235 r_symmetry_nbd_other 0.206 r_nbd_other 0.2 r_nbtor_refined 0.173 r_symmetry_xyhbond_nbd_refined 0.159 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.081 r_metal_ion_refined 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2060 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing