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Crystal Structure of Tetur04g02350
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6PNT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295 0.2 M Sodium Chloride, 0.1 M Bis-tris pH 5.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.19 43.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.189 α = 88.544 b = 66.085 β = 72.78 c = 75.971 γ = 87.401
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 90.6 0.049 0.049 0.066 0.044 0.998 16.45 2.1 55037
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 91.7 0.232 0.232 0.33 0.22 0.883 2.88 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6PNT 2 29.92 54749 2720 90.602 0.16 0.1575 0.1663 0.2033 0.2083 25.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.126 -0.078 -0.063 -0.349 -0.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.317 r_dihedral_angle_4_deg 16.612 r_dihedral_angle_3_deg 13.038 r_dihedral_angle_1_deg 5.988 r_lrange_it 5.072 r_lrange_other 4.916 r_scangle_it 2.487 r_scangle_other 2.486 r_angle_other_deg 2.238 r_mcangle_it 1.809
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.317 r_dihedral_angle_4_deg 16.612 r_dihedral_angle_3_deg 13.038 r_dihedral_angle_1_deg 5.988 r_lrange_it 5.072 r_lrange_other 4.916 r_scangle_it 2.487 r_scangle_other 2.486 r_angle_other_deg 2.238 r_mcangle_it 1.809 r_mcangle_other 1.809 r_scbond_it 1.542 r_scbond_other 1.542 r_angle_refined_deg 1.533 r_mcbond_it 1.163 r_mcbond_other 1.161 r_nbd_other 0.266 r_symmetry_nbd_other 0.214 r_nbd_refined 0.209 r_symmetry_xyhbond_nbd_refined 0.189 r_nbtor_refined 0.167 r_symmetry_nbd_refined 0.166 r_xyhbond_nbd_refined 0.152 r_ncsr_local_group_1 0.09 r_chiral_restr 0.082 r_symmetry_xyhbond_nbd_other 0.07 r_xyhbond_nbd_other 0.066 r_symmetry_nbtor_other 0.065 r_bond_other_d 0.034 r_gen_planes_other 0.012 r_bond_refined_d 0.01 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6851 Nucleic Acid Atoms Solvent Atoms 826 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing