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Human Prx1-Srx Decameric Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RII 2RII, 1QMV experimental model PDB 1QMV 2RII, 1QMV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 291 100 mM Citric acid pH 4.5
100 mM CsCl
26% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.93 57.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 330.834 α = 90 b = 109.937 β = 122.34 c = 260.143 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 315 2006-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.97 50 99.8 0.976 9.05 5.4 160698
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.97 3.05 0.661
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2RII, 1QMV 2.97 38.97 141655 7475 91.77 0.19413 0.19225 0.1941 0.23006 0.2308 RANDOM 62.247
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.98 -2.43 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.587 r_dihedral_angle_4_deg 19.277 r_dihedral_angle_3_deg 19.129 r_long_range_B_refined 12.485 r_long_range_B_other 12.485 r_scangle_other 9.352 r_mcangle_it 8.838 r_mcangle_other 8.838 r_dihedral_angle_1_deg 7.296 r_scbond_it 6.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.587 r_dihedral_angle_4_deg 19.277 r_dihedral_angle_3_deg 19.129 r_long_range_B_refined 12.485 r_long_range_B_other 12.485 r_scangle_other 9.352 r_mcangle_it 8.838 r_mcangle_other 8.838 r_dihedral_angle_1_deg 7.296 r_scbond_it 6.205 r_scbond_other 6.196 r_mcbond_it 5.795 r_mcbond_other 5.795 r_angle_refined_deg 1.484 r_angle_other_deg 1.207 r_chiral_restr 0.057 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 44487 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 255
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing