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rFVIIIFc-VWF-XTEN (BIVV001)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MF2 experimental model PDB 6N29
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.6615 f_angle_d 0.5542 f_chiral_restr 0.045 f_plane_restr 0.0034 f_bond_d 0.0029
Sample rFVIIIFc-VWF-XTEN (BIVV001)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 116200 Reported Resolution (Å) 2.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6MF2, 6N29) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 3.7 CTF CORRECTION CTFFIND 4.1.13 MODEL FITTING UCSF Chimera 1.13 MODEL FITTING Coot 0.8.9.2 INITIAL EULER ASSIGNMENT cisTEM 1.0.0beta FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1 MODEL REFINEMENT PHENIX 1.18 MODEL REFINEMENT Coot 0.8.9.2 MODEL REFINEMENT Rosetta 3.10 MODEL REFINEMENT ISOLDE 1.0b3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION