7KWI

Solution Structure of the R2ab Repeat Domain from Staph. epidermidis Autolysin (AtlE)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-15N] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
23D HNCACB0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
33D CBCA(CO)NH0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
43D HNCA0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
53D HN(CO)CA0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
63D HNCO0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
73D HBHA(CO)NH0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
83D H(CCCO)NH0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
93D (H)C(CCO)NH0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
103D 1H-15N NOESY0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide93% H2O/7% D2O50 mM6.51 atm298Bruker AVANCE III 600
112D 1H-13C HSQC aliphatic0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide100% D2O50 mM6.51 atm298Bruker AVANCE III HD 850
122D 1H-13C HSQC aromatic0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide100% D2O50 mM6.51 atm298Bruker AVANCE III HD 850
133D 1H-13C NOESY aliphatic0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide100% D2O50 mM6.51 atm298Bruker AVANCE III HD 850
143D 1H-13C NOESY aromatic0.5 mM [U-15N];[U-13C] Autolysin repeat domain (R2ab) of Staphylococcus epidermidis, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide100% D2O50 mM6.51 atm298Bruker AVANCE III HD 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III HD850
NMR Refinement
MethodDetailsSoftware
simulated annealingcns-solve 1.3CNS
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift assignmentCARA1.9v1Keller and Wuthrich
3structure calculationCYANA2.1Guntert, Mumenthaler and Wuthrich
4refinementCNS1.3Brunger, Adams, Clore, Gros, Nilges and Read
5peak pickingCARA1.9v1Keller and Wuthrich