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LsfA from P. aeruginosa, a 1-Cys Prx in Sulfonic acid form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PRX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.25 291.15 Sodium phosphate citrate , Sodium Cloride, PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.19 43.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.569 α = 90 b = 95.239 β = 105.92 c = 59.83 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.4587 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30.64 86.4 0.078 0.998 9.4 1.15 26158
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 1.12 0.798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PRX 2 30.64 24923 1236 86.38 0.2225 0.2207 0.2578 0.2206 RANDOM 27.617
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.034 r_dihedral_angle_3_deg 16.528 r_dihedral_angle_4_deg 14.241 r_dihedral_angle_1_deg 6.785 r_mcangle_it 3.054 r_angle_other_deg 2.25 r_mcbond_it 2.036 r_mcbond_other 2.032 r_angle_refined_deg 1.507 r_chiral_restr 0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.034 r_dihedral_angle_3_deg 16.528 r_dihedral_angle_4_deg 14.241 r_dihedral_angle_1_deg 6.785 r_mcangle_it 3.054 r_angle_other_deg 2.25 r_mcbond_it 2.036 r_mcbond_other 2.032 r_angle_refined_deg 1.507 r_chiral_restr 0.066 r_bond_other_d 0.034 r_gen_planes_other 0.01 r_bond_refined_d 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3278 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction autoPROC data scaling PHASER phasing