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DENV1 SLA bottom stem RNA (DenvBS)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 200 uM [U-100% 2H] DenvSLA, 10 mM potassium phosphate, 10 mM potassium chloride 90% H2O/10% D2O 40 mM 6.5 1 atm 298 Bruker AVANCE II 600 2 2D 1H-1H NOESY 200 uM [U-100% 2H] DenvSLA, 10 mM potassium phosphate, 10 mM potassium chloride 90% H2O/10% D2O 40 mM 6.5 1 atm 298 Bruker AVANCE II 600 3 2D 1H-1H NOESY 200 uM DenvSLA, 10 mM potassium phosphate, 10 mM potassium chloride 90% H2O/10% D2O 40 mM 6.5 1 atm 298 Bruker AVANCE II 500 4 2D 1H-1H TOCSY 200 uM DenvSLA, 10 mM potassium phosphate, 10 mM potassium chloride 90% H2O/10% D2O 40 mM 6.5 1 atm 298 Bruker AVANCE II 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE II 600 2 Bruker AVANCE II 500
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 400 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin Bruker Biospin 2 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment NMRFAM-SPARKY Lee W, Tonelli M, Markley JL 4 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore