Experiment: 7JYN

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
2	2D 1H-13C HSQC	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
3	2D HNOE	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
4	3D HNCO	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
5	3D HNCA	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
6	3D HNCACB	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
10	3D CBCA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
9	3D HBHA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
8	3D HCCH-TOCSY	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
7	3D 13C_15N_simNOESY	0.5 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
11	2D 1H-15N HSQC	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
30	2D 1H-13C HSQC aliphatic	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
29	2D HNOE	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
28	3D HNCO	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
27	3D HBHA(CO)NH	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
26	3D HNCACB	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
25	3D CBCA(CO)NH	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
24	3D HCCH-TOCSY	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
23	3D 13C_15N_simNOESY	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
22	3D 13C_edited_NOESY_aromatic	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
21	3D X-filtered_NOESY	0.25 mM NSD3(148-184), 0.25 mM U-100% 13C; U-100% 15 Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE 800
20	2D 1H-15N HSQC	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
19	2D 1H-13C HSQC	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
18	2D HNOE	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
17	3D HNCO	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
16	3D HNCA	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
15	3D HNCACB	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
14	3D CBCA(CO)NH	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
13	3D HBHA(CO)NH	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
12	3D HCCH-TOCSY	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
31	3D 13C_15N_simNOESY	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600
32	3D 13C_edited_NOESY_aromatic	0.25 mM [U-100% 13C; U-100% 15N] NSD3(148-184), 0.2 mM [U-100% 13C; U-100% 15N] Brd3ET, 100 mM sodium chloride, 20 mM sodium phosphate, 2 mM 2-mercaptoethanol	90% H2O/10% D2O	100 mM NaCl mM	7.0	1 atm	298	Bruker AVANCE III HD 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
distance geometry		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	2.3b, 3.2	Bruker Biospin
2	processing	NMRPipe	10.8	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	processing	TopSpin	2.3b	Bruker Biospin
3	chemical shift assignment	AutoAssign	2.4	Zimmerman, Moseley, Kulikowski and Montelione
4	chemical shift assignment	PINE Server		Woonghee Lee, Arash Bahrami, Hesam Dashti, Hamid R. Eghbalnia, Marco Tonelli, William M. Westler, John L. Markley. (2019) Journal of Biomolecular NMR. 73(5): 213-222.
6	data analysis	Sparky		Goddard
7	geometry optimization	ASDP	2.3	Huang et al.
8	structure calculation	CYANA	3.98.13	Guntert, Mumenthaler and Wuthrich
9	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
10	peak picking	Sparky		Goddard

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7JYN | pdb_00007jyn

Solution NMR structure of human Brd3 ET complexed with NSD3(148-184) peptide

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 7JYN | pdb_00007jyn

Solution NMR structure of human Brd3 ET complexed with NSD3(148-184) peptide

7JYN | pdb_00007jyn