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Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z802821712 (A71EV2A-x0437)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.05 293.15 0.1 M MES, pH 6.05, 16 % PEG 20,000
Crystal Properties Matthews coefficient Solvent content 2.46 50.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.27 α = 90 b = 56.4 β = 94.4 c = 64.53 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-10-11 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.94055 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 47.17 97.2 0.162 0.175 0.067 0.995 7 7 59121
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 95.7 2.635 2.838 1.047 0.32 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 47.21 56275 2840 97.11 0.19887 0.19724 0.2114 0.23163 0.244 RANDOM 21.662
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 0.51 0.49 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.366 r_dihedral_angle_4_deg 18 r_dihedral_angle_3_deg 12.345 r_dihedral_angle_1_deg 7.094 r_long_range_B_refined 6.672 r_long_range_B_other 6.016 r_scangle_other 3.111 r_mcangle_other 2.461 r_mcangle_it 2.46 r_scbond_other 2.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.366 r_dihedral_angle_4_deg 18 r_dihedral_angle_3_deg 12.345 r_dihedral_angle_1_deg 7.094 r_long_range_B_refined 6.672 r_long_range_B_other 6.016 r_scangle_other 3.111 r_mcangle_other 2.461 r_mcangle_it 2.46 r_scbond_other 2.002 r_scbond_it 1.999 r_angle_refined_deg 1.624 r_mcbond_other 1.519 r_mcbond_it 1.503 r_angle_other_deg 1.486 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2157 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing XDS data reduction