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ammonium sulfate-based apo human FABP4, primitive orthorhombic form I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 protein in 25mM Tris/HCl pH 7.5 100mM NaCl, see also PMID 27658368
Crystal Properties Matthews coefficient Solvent content 2.19 43.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.649 α = 90 b = 53.627 β = 90 c = 75.018 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999900 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 37.51 99 0.034 0.037 0.999 32.31 6.089 44522 15.212
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.2 89.9 0.113 0.127 0.992 10.72 4.446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.17 37.51 41469 2215 97.23 0.1383 0.1366 0.1365 0.1722 0.1718 RANDOM 12.421
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 -0.68 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.299 r_dihedral_angle_2_deg 8.741 r_dihedral_angle_1_deg 5.992 r_rigid_bond_restr 5.788 r_angle_refined_deg 2.169 r_mcangle_it 1.687 r_mcbond_it 1.284 r_mcbond_other 1.259 r_angle_other_deg 0.737 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.299 r_dihedral_angle_2_deg 8.741 r_dihedral_angle_1_deg 5.992 r_rigid_bond_restr 5.788 r_angle_refined_deg 2.169 r_mcangle_it 1.687 r_mcbond_it 1.284 r_mcbond_other 1.259 r_angle_other_deg 0.737 r_chiral_restr 0.122 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1022 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 10
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing