7FVQ

PanDDA analysis group deposition -- PHIP in complex with Z68576046


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.627720% PEG 8000, 0.04M potassium phosphate
Crystal Properties
Matthews coefficientSolvent content
1.7730.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.891α = 90
b = 27.434β = 99.96
c = 56.337γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-09-24SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92124DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1555.568.60.0580.0630.0250.99422.55.830306
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.151.175.90.240.3390.240.6561.1128

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT7av91.1555.4928776153068.480.16630.1650.1892RANDOM19.532
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.320.93-0.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.484
r_dihedral_angle_4_deg18.064
r_dihedral_angle_3_deg13.358
r_dihedral_angle_1_deg5.998
r_mcangle_it3.199
r_angle_refined_deg1.628
r_mcbond_other1.589
r_mcbond_it1.552
r_angle_other_deg1.434
r_chiral_restr0.083
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.484
r_dihedral_angle_4_deg18.064
r_dihedral_angle_3_deg13.358
r_dihedral_angle_1_deg5.998
r_mcangle_it3.199
r_angle_refined_deg1.628
r_mcbond_other1.589
r_mcbond_it1.552
r_angle_other_deg1.434
r_chiral_restr0.083
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1003
Nucleic Acid Atoms
Solvent Atoms216
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing