7FC9

Crystal structure of CmABCB1 in lipidic mesophase revealed by LCP-SFX


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIPIDIC CUBIC PHASE293Micro-crystals were generated by incubation of 50 microL LCP containing the protein and 7.7 MAG/cholesterol in a 1.5 mL tube with 0.7 mL crystallization solution containing 26-30% 1,4-butanediol, 0.1 M Tris pH 7.9, 0.2 M zinc acetate.
Crystal Properties
Matthews coefficientSolvent content
3.6266.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.9α = 90
b = 285.9β = 90
c = 86.8γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298CCDMPCCD2015-11-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1FREE ELECTRON LASERSACLA BEAMLINE BL31.771SACLABL3

Serial Crystallography

Sample delivery method
Diffraction IDDescriptionSample Delivery Method
1injection

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Split (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.245.451000.056712.37214947845
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Split (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.222.261000.84841.43591

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6A6M2.220.00147761249199.8120.1940.19220.217963.481
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.473-1.6720.199
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33
r_dihedral_angle_4_deg19.558
r_dihedral_angle_3_deg16.677
r_lrange_it7.925
r_scangle_it5.418
r_dihedral_angle_1_deg5.38
r_mcangle_it3.921
r_scbond_it3.38
r_mcbond_it2.587
r_angle_refined_deg1.412
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33
r_dihedral_angle_4_deg19.558
r_dihedral_angle_3_deg16.677
r_lrange_it7.925
r_scangle_it5.418
r_dihedral_angle_1_deg5.38
r_mcangle_it3.921
r_scbond_it3.38
r_mcbond_it2.587
r_angle_refined_deg1.412
r_nbtor_refined0.285
r_symmetry_nbd_refined0.199
r_nbd_refined0.194
r_symmetry_xyhbond_nbd_refined0.172
r_xyhbond_nbd_refined0.142
r_metal_ion_refined0.105
r_symmetry_metal_ion_refined0.084
r_chiral_restr0.055
r_bond_refined_d0.014
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4448
Nucleic Acid Atoms
Solvent Atoms148
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata reduction
CrystFELdata scaling
PHASERphasing