7F7N
Solution structure of apo-WhiB4 from Mycobacterium tuberculosis
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 950 |
2 | 2D 1H-15N HSQC | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 950 |
3 | 3D HNCACB | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 700 |
4 | 3D CBCA(CO)NH | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 700 |
5 | 3D CCHCOSY | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 700 |
7 | 3D 1H-15N NOESY | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 950 |
6 | 3D 1H-13C NOESY | 0.4 mM [U-100% 13C; U-100% 15N] WhiB4 | 95% H2O/5% D2O | 50 mM NaCl mM | 7 | 1 atm | 298 | Bruker AVANCE III HD 950 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 700 |
2 | Bruker | AVANCE III HD | 950 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | SANE | Duggan, Legge, Dyson & Wright | |
2 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
3 | chemical shift assignment | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | peak picking | NMRView | Johnson, One Moon Scientific |