Ny-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 0.5 mM H ASN(OH)-RTD1 | 90% H2O/10% D2O | 0 | 4-5 | 1 bar | 298 | Bruker AVANCE 600 |
| 3 | 2D 1H-1H NOESY | 0.5 mM H ASN(OH)-RTD1 | 90% H2O/10% D2O | 0 | 4-5 | 1 bar | 298 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DGSA-distance geometry simulated annealing | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with acceptable covalent geometry |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 9 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | NMRFAM-SPARKY | Lee et al. Bioinformatics 2015 Apr; 31(8):1325-7 | |
| 4 | peak picking | NMRFAM-SPARKY | Lee et al. Bioinformatics 2015 Apr; 31(8):1325-7 | |
| 5 | structure calculation | PREDITOR | M. V. Berjanskii, S. Neal, D. S. Wishart, Nucleic Acids Res., 2006, 34, W63-W69. | |
