X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG 3350, KNO3
Crystal Properties
Matthews coefficientSolvent content
2.0339.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.892α = 90
b = 62.287β = 96.153
c = 96.653γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2021-01-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL32XU1.00000SPring-8BL32XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7748.99397.80.1980.973.951.7943540
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.771.8895.11.2880.4660.48

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3od31.77348.33543540222598.6050.2080.20560.253343.305
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.362-0.971-0.1710.018
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.212
r_dihedral_angle_4_deg17.325
r_dihedral_angle_3_deg16.055
r_dihedral_angle_1_deg8.169
r_lrange_it7.787
r_lrange_other7.776
r_scangle_other5.788
r_scangle_it5.783
r_mcangle_it4.593
r_mcangle_other4.593
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.212
r_dihedral_angle_4_deg17.325
r_dihedral_angle_3_deg16.055
r_dihedral_angle_1_deg8.169
r_lrange_it7.787
r_lrange_other7.776
r_scangle_other5.788
r_scangle_it5.783
r_mcangle_it4.593
r_mcangle_other4.593
r_scbond_it3.911
r_scbond_other3.91
r_mcbond_other3.463
r_mcbond_it3.462
r_angle_refined_deg1.589
r_angle_other_deg1.235
r_nbd_other0.211
r_symmetry_nbd_refined0.209
r_nbd_refined0.2
r_symmetry_nbd_other0.18
r_nbtor_refined0.157
r_xyhbond_nbd_refined0.147
r_symmetry_xyhbond_nbd_refined0.114
r_symmetry_xyhbond_nbd_other0.101
r_metal_ion_refined0.101
r_symmetry_nbtor_other0.079
r_chiral_restr0.065
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3417
Nucleic Acid Atoms
Solvent Atoms186
Heterogen Atoms45

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
XSCALEdata scaling
BALBESphasing