Crystallization
| Crystalization Experiments |
|---|
| ID | Method | pH | Temperature | Details |
|---|
| 1 | EVAPORATION | | 287.15 | Sodium citrate tribasic |
| Crystal Properties |
|---|
| Matthews coefficient | Solvent content |
|---|
| 3.68 | 66.54 |
Crystal Data
| Unit Cell |
|---|
| Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 139.248 | α = 90 |
| b = 182.286 | β = 90 |
| c = 59.492 | γ = 90 |
| Symmetry |
|---|
| Space Group | C 2 2 21 |
|---|
Diffraction
| Diffraction Experiment |
|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
|---|
| 1 | 1 | x-ray | 100 | PIXEL | DECTRIS PILATUS3 6M | | 2016-05-15 | M | SINGLE WAVELENGTH |
| Radiation Source |
|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
|---|
| 1 | SYNCHROTRON | SSRF BEAMLINE BL19U1 | 0.97916 | SSRF | BL19U1 |
Data Collection
| Overall |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
|---|
| 1 | 2.5 | 50 | 98.6 | 0.073 | 17.6 | 3.3 | | 26349 | | | |
| Highest Resolution Shell |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | CC (Half) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
|---|
| 1 | 2.5 | 2.59 | | | 0.777 | | | |
Refinement
| Statistics |
|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B |
|---|
| X-RAY DIFFRACTION | SAD | THROUGHOUT | 2.5 | 45.02 | 23171 | 1232 | 91.31 | 0.1682 | 0.1659 | 0.2136 | 0.1889 | RANDOM | 45.548 |
| Temperature Factor Modeling |
|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
|---|
| -0.12 | | | 0.53 | | -0.41 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| r_dihedral_angle_2_deg | 38.397 |
| r_dihedral_angle_3_deg | 16.633 |
| r_dihedral_angle_4_deg | 15.726 |
| r_dihedral_angle_1_deg | 5.932 |
| r_angle_other_deg | 3.52 |
| r_angle_refined_deg | 1.198 |
| r_chiral_restr | 0.074 |
| r_bond_refined_d | 0.008 |
| r_gen_planes_other | 0.005 |
| r_gen_planes_refined | 0.004 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| r_dihedral_angle_2_deg | 38.397 |
| r_dihedral_angle_3_deg | 16.633 |
| r_dihedral_angle_4_deg | 15.726 |
| r_dihedral_angle_1_deg | 5.932 |
| r_angle_other_deg | 3.52 |
| r_angle_refined_deg | 1.198 |
| r_chiral_restr | 0.074 |
| r_bond_refined_d | 0.008 |
| r_gen_planes_other | 0.005 |
| r_gen_planes_refined | 0.004 |
| r_bond_other_d | |
| Non-Hydrogen Atoms Used in Refinement |
|---|
| Non-Hydrogen Atoms | Number |
|---|
| Protein Atoms | 3612 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 105 |
| Heterogen Atoms | 1 |
Software
| Software |
|---|
| Software Name | Purpose |
|---|
| REFMAC | refinement |
| HKL-2000 | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| REFMAC | phasing |
